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The other structural thing, but this would be a major change, would be to have upvoting/downvoting on comments and have this affect reputation. If people could loose a fair amount of rep for dismissive (but not blatantly offensive) comments, then you might get less of them. I think such comments can discourage people.
There are reasons why the comment system is the way it is but I definitely think there is room for improvement. I'm glad you brought this up and I would love to hear more opinions about this.
Currently, comments can only be upvoted and this has no impact on reputation at all. One of the reasons for this is to de-emphasize comments. The other is that comments are sorted chronologically and not by votes, except for the selection of comments that appear in the unexpanded view.
Another issue with comments is the much smaller font size used, which may be problematic for some users. I haven't heard complaints, but I do remember a big mayhem because someone misread one letter in one of my comments.
Dear testcomment: as long as you are testing, please check that the "edit" link next to your post works, and expand your clever comment into something that is better developed and constructive. At the moment, your intentions are not completely clear. For example, are you suggesting that we should choose a population that does not participate in MO, and have them conduct this discussion instead?
I stand by my position in the earlier arguments, albeit not their (sometimes) unfortunate choice language.
That is, I see all of these ideas as solutions in search of a problem. We've seen rep-hiding suggestions to practically every single perceived problem on MO.
Also, the idea that a little friendly competition (through rep scores) would make women feel uncomfortable sounds patronizing in extremis, but what do I know.
Izabella Laba posted a follow-up post on her blog.
I don't visit meta very often but this is an interesting thread.
I see that on her blog, Izabella Laba says that "there are actually things that site owners and moderators can do to make the site more attractive." What are these things? I didn't see specific suggestions but I read only one blog post and its associated comments. Perhaps she can be persuaded to give specific suggestions even if she does not want to participate on MO.
The list of subject areas by popularity on MO seems to correlate fairly well (though not perfectly) with the list given by Joseph Grcar in his December 2010 Notices article on "Topical bias in generalist mathematical journals." To the extent that there is a correlation, it suggests to me that much of the subject-matter bias on MO is not a function of MO structure per se, but more of a reflection of pre-existing biases in the mathematical community.
One question that I have not seen explicitly addressed is, given that there is subject-matter bias on MO, why does that bias need to be altered? I don't see the practitioners in the fields that are less represented on MO saying that they want MO to serve their sub-community better. For example, it's conceivable to me that those other fields have a better mechanism than MO to address the needs that MO is trying to address, and that MO's "bias" gives just the right amount of help to certain fields so that there is now perfect balance across all subfields of mathematics, once all mechanisms are taken into account. While I don't actually believe that there is perfect balance, I say this to illustrate the point that I'd like to see more evidence that the existing bias ought to be changed.
The example she gave is of Google+ compared to Flickr. This gives you the option to shut people out, and invite people in. So if enough people shut one individual out, they're effectively ostracized from the community. This is a little more extreme than what MO does with its reputation system and a little more personal, it would require people to make judgements on whether or not to shun an individual or to give them more access to the community. I suspect most people would consider this prohibitive to passive participation on MO.
I really don't like that idea, Michael, because it sounds like that judgment would be highly publication-dependent. It is quite possible for users to have acquired some level of expertise or good judgment in an area where they haven't published at all. (I'm also not sure how that would work for those who are active but prefer to remain anonymous, such as our friend quid.)
Micheal might mean «active on MO in that field» as opposed to «with more than two MathSciNet pages» :-)
Emil identified the key problem with this idea. As in the early days of MO, moderators would have to actively moderate questions from less popular fields until a critical mass of users in that field make their way to 3000 points. Given the number of distinguishable fields, that process would last forever and would be severely taxing on the moderators. As it stands, it's not a realistic proposal.
@Ryan: I'm not sure that Laba meant to suggest that MO emulate the specific features of Google+ mentioned in the page she linked to. As I understood her comment she was using that page simply to demonstrate that, in her words, "there are actually things that site owners and moderators can do to make [a] site more attractive" to a particular audience, not necessarily to suggest specific things that should be done here.