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Moderators (not 10k+) can delete comments, but rarely do. A comment could also be automatically deleted if it is repeatedly flagged as spam.
I remember it happened once or twice before that somebody thought his comments were being deleted, but they actually were never making it to the server because of a connectivity issue (or something).
Further, at some expense of time, Anton can look in database dumps for deleted comments, if you have a particular comment in mind that you feel requires some detective work. Maybe one day deleted comments will be visible to users >10k.
@Scott: "Maybe one day deleted comments will be visible to users > 10k."
Interesting. Do you mean "maybe one day" in the sense of "Maybe one day the smooth Poincare conjecture will be solved?" or in some more proximate sense?
@Pete, ssshh!
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